My 2 pennies worth is that it could be a problem with the pressure plate or some film flatness issue, this would be magnified with closer focus distances
I don't think that's true. Let me have another go at this one because I think I confused myself at the first attempt.
If there is a problem with the camera, it will be a difference in distance between the lens to film and the lens to screen. This might be due to the screen being out of alignment, the film not being flat or the mirror out of position. The question then is, will the error in distances show up more if the lens is focussed close-up?
I think the answer is no. Whether the error is noticed will depend on whether the depth of focus (like depth of field but at the film plane) is sufficiently large to accomodate the error. If it is, then no difference would be seen. If it's not, then the image on the film will look out of focus.
So, will the depth of focus be effected by the lens being focussed close-up? The depth of focus will change similarly to depth of field when the aperture is changed. It will also change if the distance between lens and film changes similarly to how depth of field changes if the subject to lens distance changes. But, the distance from lens to film may not change if the lens is focussed close-up. Take for instance, if a close-up supplementary lens is used. The lens may be focussed on infinity though the subject plane is brought much closer by the supplementary lens. In this case, the depth of focus would be the same as if the lens was being used to photograph a subject at infinity. Also, if the lens itself is moved to enable the closer focussing, it would move AWAY from the film which would actually INCREASE the depth of focus so making the problem less obvious.
So, my conclusion is, if there is an error with the camera, it will be no worse when doing close-ups than at any other time. It would, though, be worse, or more obvious, when using larger apertures.
I thank you....
Chops, what setup were you using? Any other clues you can give us?